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Contact

github.com/bio-visualisation

twitter.com/VizBio

07907547176

Coding Skills

Data Analysis

Bulk gene expression deconvolution by scRNA-Seq data (e.g.,scaden)

RNA-Seq alignment (e.g.,STAR)

Differential gene expression (e.g.,DESeq2)

Circular RNA (e.g.,CIRI)

Alternative polyadenylation(e.g.,qapa)

Gene Set Enrichment Analysis (e.g.,GSEA)

Data visualization (e.g.,ggplot2)

Main

budhaditya basu

I am pursuing doctoral studies in Biotechnology. My research work focuses on the back-splicing events in mammalian retina and its role in axon guidance. I code for biological data analysis, visualization as well as statistics. I use cluster computer for handling big data like bulk RNA-Seq as well as single-cell RNA-Seq.

Education

Rajiv Gandhi Centre for Biotechnology

PhD in Biotechnology
Neuro Stem Cell Biology Lab
Supervisor: Dr. Jackson James

Trivandrum, India

2017 - Present

North Eastern Hill University

M.Sc. in Biotechnology

Shillong, India

2014 - 2016

Gold Medalist

Work Experience

National Brain Research Centre

Junior Research Fellow
Synapse Lab
Supervisor: Dr. Sourav Banerjee

Gurgaon, India

2016 - 2017


Research Project: Role of novel lnc RNAs in synapse formation
Localisation of novel lncRNAs in primary hippocampal neuronal cultures by FISH.

Research Project: Coordinated translation and proteosomal degradation events promote homeostatic plasticity in neurons

Expertise

Laboratory Techniques

Cell Culture
HEK293T cell line, Primary neurons from hippocampus and retina
Lentivirus preparation & concentration
Adeno-associated virus (AAV) preparation & concentration
Molecular techniques
Traditional and Infusion Cloning
Immunocytochemistry,FISH
Transgenic lines
Maintenance, breeding, ear-tagging & genotyping
Laboratory Animals
Maintaining & breeding for timed pregnant experiments
Expression studies
Western Blot & Densitometric analysis
qRT-PCR
Laser Scanning Confocal Imaging

N/A

N/A

Workshops

Big Data Analysis in Life Science and Healthcare

Building Bharat Boston Bioscience (B4) Program
Department of Biotechnology | Govt. of India

N/A

March 2021

RNA-Seq Data Analysis Hands-on Workshop

Massive Data Anlytics | University of Kerala

Trivandrum, India

Sept 2019

Hands-on RNA-Seq data analysis with R programming

Institute of Bioinformatics and Applied Biotechnology (IBAB)

Bangalore, India

June 2019

Certificate Course on Laboratory Animal Science

Animal Research Facility
Rajiv Gandhi Centre for Biotechnology

Trivandrum, India

Dec 2017

Scholarships and Certificates

Student Merit Award

Best Oral Presentation
Rajiv Gandhi Centre for Biotechnology

N/A

Nov 2019

Rector’s Gold Medal

North Eastern Hill University

N/A

2017

Junior Research Fellowship

CSIR-UGC NET Life Science

N/A

2015

JNU CBEE M.Sc Biotechnology scholarship

DBT, Govt. of India

N/A

2014-2016

Publication/Preprints

Pax6 Modulates Intra-Retinal Axon Guidance and Fasciculation of Retinal Ganglion Cells during Retinogenesis

Scientific Reports

N/A

2020

nature.com/articles

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    Shiny App

    Literate Coding

    Illustration Skills

    Citation tools

Disclaimer



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Last updated: October 15, 2021